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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1473157_1474275_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1473157 - 1474275
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTTTTCCTGAAG
Flanking Amino Acid:
REAQQIYTFSMTASDGVQES
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.5
36.8
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
81.8
0.72
0.9
84
24.6
Minor 5ss
43.6
-0.7
2.9
56.2
48
Minor BPS
54.5
-0
1.9
68.2
39.1

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347