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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14733828_14740260_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14733828 - 14740260
Intron Length:
6433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTTTTTTCCC
Flanking Amino Acid:
NNSESKAVAKVKCEAKSALP
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
44.3
-0.4
3.6
73.48
37.9

Associated Gene:

Gene:
ARID5B
Ensembl Gene ID:
ENSAPLG00000010915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011394
14666197 - 14768239
102043