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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14740466_14742752_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14740466 - 14742752
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
GTCCCTCTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
CTTATCTAAATA
Flanking Amino Acid:
ERIPYLGFKQINLWTMFQAA
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
70.8
0.47
0.9
65.4
34.9
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
56.6
0.2
1.7
66.99
40.2

Associated Gene:

Gene:
ARID5B
Ensembl Gene ID:
ENSAPLG00000010915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011394
14666197 - 14768239
102043