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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14750539_14762176_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14750539 - 14762176
Intron Length:
11638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTAATCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TGTTCCTTAATC
Flanking Amino Acid:
AATCTRRHYERLILPYERFI
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
67.6
0.4
0.9
58.9
37.9
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
86.9
1.14
0.9
87.34
29.1

Associated Gene:

Gene:
ARID5B
Ensembl Gene ID:
ENSAPLG00000010915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011394
14666197 - 14768239
102043