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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14797695_14799723_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14797695 - 14799723
Intron Length:
2029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
GTTCCAATCATT
Flanking Amino Acid:
EAFWQHFYDLSQWKHCCEEL
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.7
39.3
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
89.6
0.89
0.6
88.7
20.5
Minor 5ss
30.9
-2.2
2.6
29.9
36.5
Minor BPS
44.8
-0.3
2.2
68.74
41.7

Associated Gene:

Gene:
RTKN2
Ensembl Gene ID:
ENSAPLG00000011031
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011493
14795497 - 14817015
21519