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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14799890_14806352_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14799890 - 14806352
Intron Length:
6463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AAATCATTACCA
Flanking Amino Acid:
EPALTVSINKETRIRAVDKD
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79
0.65
0.8
74.2
35.4
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
54
0.12
1.9
65.56
40

Associated Gene:

Gene:
RTKN2
Ensembl Gene ID:
ENSAPLG00000011031
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011493
14795497 - 14817015
21519