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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14807590_14809178_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14807590 - 14809178
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
RTHNLTITGNEESSFWLPLY
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.2
0.84
0.7
80.5
31.5
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
RTKN2
Ensembl Gene ID:
ENSAPLG00000011031
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011493
14795497 - 14817015
21519