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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14814293_14815953_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14814293 - 14815953
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCACCCCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTCTCCTCACCC
Flanking Amino Acid:
TDICFENVTIFDEAGPDFQV
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
74.1
0.54
0.8
70.1
30.5
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
61.8
0.35
1.9
74.59
42.4

Associated Gene:

Gene:
RTKN2
Ensembl Gene ID:
ENSAPLG00000011031
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011493
14795497 - 14817015
21519