About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_14816072_14816978_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14816072 - 14816978
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTAAG
5'SS Class:
major
3'SS Sequence:
TGACTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATTTATTTGACT
Flanking Amino Acid:
KDSDHFSNKERSQRYAVFCL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
37.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
74.6
0.55
0.9
68.4
37.2
Minor 5ss
42.9
-0.8
2.5
50.7
40.1
Minor BPS
71.2
0.75
1.4
86.4
32.8

Associated Gene:

Gene:
RTKN2
Ensembl Gene ID:
ENSAPLG00000011031
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011493
14795497 - 14817015
21519