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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1486143_1499739_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1486143 - 1499739
Intron Length:
13597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGACAA
U12 Branch Point Sequence:
AGACCCTTAGAC
Flanking Amino Acid:
LHQKFDLVIKAEQDNGHPLP
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
50.6
0.02
1.2
59
38
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
49.9
-0
1.7
58.17
39.5

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347