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Intron Name: Anas_platyrhynchos_platyrhynchos_6_1499853_1505675_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1499853 - 1505675

Intron Length:

5823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTTGGTGTC

5'SS Class:

major

3'SS Sequence:

GTCTTTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TCTTTTTTACAG

Flanking Amino Acid:

RPGILYSILVGTPEDYPQYF

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.2

64.4

41.4

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

88.3

0.86

0.7

83.2

Minor 5ss

32.4

-2

3.4

41.3

39.6

Minor BPS

51.6

-0

1.8

59.29

43.1

Associated Gene:

Gene:

PCDH15

Ensembl Gene ID:

ENSAPLG00000003312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003398

1311071 - 1609417

298347