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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15080913_15082501_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15080913 - 15082501
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CATTTATCAATT
Flanking Amino Acid:
EAISCHKKAAAYLTEAMKLT
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
79
0.72
1
80.3
31.7
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
51.4
0.12
1.8
70.17
40.9

Associated Gene:

Gene:
NRBF2
Ensembl Gene ID:
ENSAPLG00000011341
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011801
15070252 - 15083917
13666