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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15093890_15099053_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15093890 - 15099053

Intron Length:

5164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATGC

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTGGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATTT

Flanking Amino Acid:

IILPAGALHQVQNFHSCVQV

Intron Amino Acid Position:

2222

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

69.3

36.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.9

0.45

1.1

41.8

Minor 5ss

37.6

-1.4

3.2

50.9

45.7

Minor BPS

64.7

0.54

1.5

79.8

36.8

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045692

15092235 - 15249994

157760

ENSAPLT00000023460

15092235 - 15199136

106902

ENSAPLT00000011984

15092235 - 15254338

162104