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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15099231_15101126_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15099231 - 15101126

Intron Length:

1896

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGATTT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTACTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CTTTCTGTACTT

Flanking Amino Acid:

ADKIREFLQKIAKEQGLEVL

Intron Amino Acid Position:

2163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

1.1

82.7

30.4

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

80.2

0.68

0.9

73.1

36.4

Minor 5ss

40.2

-1.1

3.1

47.2

Minor BPS

49.6

0.05

2.2

74.65

43.4

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045692

15092235 - 15249994

157760

ENSAPLT00000023460

15092235 - 15199136

106902

ENSAPLT00000011984

15092235 - 15254338

162104