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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15101267_15102263_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15101267 - 15102263
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
TGTAAAATCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTTGTAAAAT
Flanking Amino Acid:
AKGNGVLSKSGVLKKFEEED
Intron Amino Acid Position:
2116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
59.1
0.2
1
48.8
43.6
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
50.3
0.09
2.4
80.39
41.7

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902
ENSAPLT00000011984
15092235 - 15254338
162104