About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15103355_15103468_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15103355 - 15103468
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGAG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATTTTTAATT
Flanking Amino Acid:
GEDFKAMMPARYEDLLKSLP
Intron Amino Acid Position:
2031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.5
40.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92
0.94
0.6
85.2
29.6
Minor 5ss
34.7
-1.7
3.5
46
49.3
Minor BPS
74
0.83
1.1
81.34
34.2

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902
ENSAPLT00000011984
15092235 - 15254338
162104