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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15103560_15104016_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15103560 - 15104016
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
GTGTTACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTCTTAGTAATT
Flanking Amino Acid:
EFWDGFEDVSKRQKVKNGET
Intron Amino Acid Position:
2001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.2
37
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
77.3
0.61
0.9
70.4
40.2
Minor 5ss
49.7
-0
2.4
66.6
38.9
Minor BPS
50.2
0.08
2.2
76.06
41.3

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011984
15092235 - 15254338
162104
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902