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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15104186_15104591_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15104186 - 15104591
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
LFKECWKQGRPVLVSGMHKK
Intron Amino Acid Position:
1945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.8
38.5
Major BPS
67
0.42
1.1
58
38.5
Major PPT
88.1
0.86
0.8
85.4
27.8
Minor 5ss
39.8
-1.1
3.2
51.2
45.5
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902
ENSAPLT00000011984
15092235 - 15254338
162104