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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15104871_15105344_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15104871 - 15105344
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTTTTCTAATA
Flanking Amino Acid:
FAPVYSTGTASGKSGRTMPN
Intron Amino Acid Position:
1852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
77.3
0.62
0.9
74.3
35.3
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
60.7
0.33
1.6
72.09
33.9

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011984
15092235 - 15254338
162104
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902