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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15106258_15106437_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15106258 - 15106437
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTCCTTTACA
Flanking Amino Acid:
KLPAMNGVSQVLQNVLNHSN
Intron Amino Acid Position:
1709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.9
0.81
0.8
80.2
31.9
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
76.6
0.83
1.6
83.52
37

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023460
15092235 - 15199136
106902
ENSAPLT00000011984
15092235 - 15254338
162104
ENSAPLT00000045692
15092235 - 15249994
157760