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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15106566_15108348_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15106566 - 15108348

Intron Length:

1783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGACCT

5'SS Class:

strong_major

3'SS Sequence:

AATTGTCTTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TCCTTCTTAATT

Flanking Amino Acid:

LMPTQIIPGSVLTDLLDAMH

Intron Amino Acid Position:

1666

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

70.8

39.2

Major BPS

0.92

0.9

86.2

29.1

Major PPT

72.6

0.51

0.9

63.3

43.2

Minor 5ss

34.7

-1.7

3.2

46.8

42.3

Minor BPS

0.93

1.1

82.74

39.5

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011984

15092235 - 15254338

162104

ENSAPLT00000045692

15092235 - 15249994

157760

ENSAPLT00000023460

15092235 - 15199136

106902