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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15108439_15111052_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15108439 - 15111052

Intron Length:

2614

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TGTTATTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATTAT

U12 Branch Point Sequence:

TGTTATTTTACA

Flanking Amino Acid:

YKAKERKSSRDKELYAWMKC

Intron Amino Acid Position:

1636

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

1.2

81.4

33.4

Major BPS

72.1

0.55

1.1

62.3

43.7

Major PPT

86.1

0.81

0.8

80.1

37.1

Minor 5ss

38.3

-1.3

2.8

51.3

45.1

Minor BPS

59.2

0.28

1.8

73.14

38.1

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011984

15092235 - 15254338

162104

ENSAPLT00000045692

15092235 - 15249994

157760

ENSAPLT00000023460

15092235 - 15199136

106902