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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15112406_15114030_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15112406 - 15114030

Intron Length:

1625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCGGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTAAA

U12 Branch Point Sequence:

TGCAGTTAAACT

Flanking Amino Acid:

PVFCRFYYFRRLSFSKNGVV

Intron Amino Acid Position:

1513

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

75.4

34.5

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

79.4

0.66

0.9

77.4

36.9

Minor 5ss

33.5

-1.9

3.1

42.4

44.3

Minor BPS

46.7

-0.1

2.1

64.7

45.9

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045692

15092235 - 15249994

157760

ENSAPLT00000023460

15092235 - 15199136

106902

ENSAPLT00000011984

15092235 - 15254338

162104