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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15114233_15117186_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15114233 - 15117186
Intron Length:
2954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTCTGAAACC
Flanking Amino Acid:
KLKLQSSSNSTGIPRSVLKD
Intron Amino Acid Position:
1446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.8
80.2
31.8
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
50.1
-0
2.3
69.26
43

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902
ENSAPLT00000011984
15092235 - 15254338
162104