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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15123452_15124069_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15123452 - 15124069
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
CTTTATCCAATT
Flanking Amino Acid:
TQSSDTVKSKYPNGTHAYSG
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77
32.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
70.7
0.47
1.1
66.2
44
Minor 5ss
37.8
-1.4
2.6
45.9
42.2
Minor BPS
47
-0.1
2
69.68
41.6

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902
ENSAPLT00000011984
15092235 - 15254338
162104