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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15125050_15125115_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15125050 - 15125115

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAACG

5'SS Class:

strong_major

3'SS Sequence:

GAAAATGTGACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

AGCTACTTAAAA

Flanking Amino Acid:

EERYDYIGRGGMFLSFTENP

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

78.1

36.3

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

49.9

-0

1.2

42.2

46.6

Minor 5ss

33.8

-1.8

2.9

41.1

44.9

Minor BPS

58.9

0.27

1.6

65.26

40.4

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023460

15092235 - 15199136

106902

ENSAPLT00000011984

15092235 - 15254338

162104

ENSAPLT00000045692

15092235 - 15249994

157760