About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15125571_15126823_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15125571 - 15126823
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATAACC
Flanking Amino Acid:
TRTMVVMNDQVLEPQNVDPS
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
67.5
0.4
1.1
60.5
43.9
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
68.8
0.57
1.9
85.23
32.5

Associated Gene:

Gene:
JMJD1C
Ensembl Gene ID:
ENSAPLG00000011455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045692
15092235 - 15249994
157760
ENSAPLT00000023460
15092235 - 15199136
106902
ENSAPLT00000011984
15092235 - 15254338
162104