Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15131864_15148532_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15131864 - 15148532

Intron Length:

16669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

ATCTCTACTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTTTTTAATC

Flanking Amino Acid:

TEDSAFQPYQDDVDSLNPVL

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.03

0.7

89.8

22.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.8

0.54

0.8

71.4

33.7

Minor 5ss

35.1

-1.7

3.1

48.5

47.2

Minor BPS

74.8

0.76

1.1

33.7

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045692

15092235 - 15249994

157760

ENSAPLT00000023460

15092235 - 15199136

106902

ENSAPLT00000011984

15092235 - 15254338

162104