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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15148647_15198821_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15148647 - 15198821

Intron Length:

50175

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTCAACA

Flanking Amino Acid:

KIKQIQWPALTFKPLVGKSV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

67.8

37.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.7

0.85

0.8

85.4

27.8

Minor 5ss

32.4

-2

3.1

39.7

40.1

Minor BPS

72.9

0.71

1.4

31.4

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045692

15092235 - 15249994

157760

ENSAPLT00000023460

15092235 - 15199136

106902

ENSAPLT00000011984

15092235 - 15254338

162104