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Intron Name: Anas_platyrhynchos_platyrhynchos_6_15198987_15254314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15198987 - 15254314

Intron Length:

55328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TATATCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GTTTTTATATCT

Flanking Amino Acid:

MQLWTVSQVYVEFDDLEW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.1

1.09

0.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.6

0.73

0.9

73.7

41.3

Minor 5ss

35.9

-1.6

49.5

46.7

Minor BPS

53.9

0.2

1.9

77.05

39.5

Associated Gene:

Gene:

JMJD1C

Ensembl Gene ID:

ENSAPLG00000011455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011984

15092235 - 15254338

162104