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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15288852_15289364_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15288852 - 15289364
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GGCTTGCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGCAACT
Flanking Amino Acid:
TETITDLTVSWFPLYYELKI
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.7
0.38
0.9
62.5
39.8
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
46.7
-0.1
2.3
74.74
41.8

Associated Gene:

Gene:
REEP3
Ensembl Gene ID:
ENSAPLG00000011839
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012345
15267294 - 15302192
34899