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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15289486_15290733_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15289486 - 15290733
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGTCCTTTAATA
Flanking Amino Acid:
LHPLLSSKEREIDEYIVQAK
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.4
0.66
0.9
77.9
36.6
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
70.1
0.63
1.2
72.08
33.4

Associated Gene:

Gene:
REEP3
Ensembl Gene ID:
ENSAPLG00000011839
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012345
15267294 - 15302192
34899