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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15290848_15297655_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15290848 - 15297655
Intron Length:
6808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAAAG
Flanking Amino Acid:
ATAAVTAAVKSQGAITEKLR
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
73.2
39.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
63.9
0.47
2.4
76.5
39.2
Minor BPS
52.4
-0
1.7
60.15
42

Associated Gene:

Gene:
REEP3
Ensembl Gene ID:
ENSAPLG00000011839
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012345
15267294 - 15302192
34899