About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15308218_15311579_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15308218 - 15311579
Intron Length:
3362

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCCCCTGCC
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTCTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AATTCTTTTATT
Flanking Amino Acid:
PGASRSSPRSWYLIEQEAYK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.6
0.06
1.4
59.4
41
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.2
0.57
1
73.1
37.4
Minor 5ss
24
-3
4
36.3
40.7
Minor BPS
65.7
0.57
1.5
79.18
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011955
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012444
15308086 - 15328322
20237