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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15312488_15314150_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15312488 - 15314150
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
TGGTCTTGTATT
Flanking Amino Acid:
YVGKSFWSFTGSLTNLTFAV
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
83.1
0.75
0.8
77.1
36
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
49.9
0.08
1.8
69.08
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011955
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026298
15310639 - 15322356
11718
ENSAPLT00000012444
15308086 - 15328322
20237
ENSAPLT00000035995
15309159 - 15331959
22801