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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1532067_1537446_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1532067 - 1537446
Intron Length:
5380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GCTGTTTTAACT
Flanking Amino Acid:
YVIQYNPNDKTSNRTFDIPL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.5
0.73
0.9
77.1
36.7
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
66.2
0.59
1.4
75.46
41.9

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347