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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15327390_15328183_F

Intron Information:

Intron Rank:
10
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
15327390 - 15328183
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATTTTTT
5'SS Class:
weak_minor
3'SS Sequence:
ATATTACCCACAG|T
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTATATTCAATC
Flanking Amino Acid:
KYRVLINEKADLCLLYLNPR
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.1
67
39
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
70.2
0.46
0.9
63
37.8
Minor 5ss
62.5
0.42
2.2
71.9
39.1
Minor BPS
49.7
-0
1.7
60.19
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011955
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012444
15308086 - 15328322
20237