About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15479060_15483070_F

Intron Information:

Intron Rank:
131606
Intron Class:
major
Intron Phase:
Intron Coordinates:
15479060 - 15483070
Intron Length:
4011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGCTGG
5'SS Class:
major
3'SS Sequence:
TCCTTCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGATGCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.4
43.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
80.4
0.68
0.7
72.6
32.2
Minor 5ss
43.9
-0.7
2.8
55.4
48.8
Minor BPS
49.8
0.07
2.1
71.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020642
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038850
15478843 - 15493476
14634