Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15483157_15493298_F

Intron Information:

Intron Rank:

131607

Intron Class:

major

Intron Phase:

Intron Coordinates:

15483157 - 15493298

Intron Length:

10142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAGA

5'SS Class:

strong_major

3'SS Sequence:

GTCTTCTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTACAT

U12 Branch Point Sequence:

CTGCTCACAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.7

40.1

Major BPS

0.37

1.3

Major PPT

79.2

0.66

0.8

31.7

Minor 5ss

31.4

-2.1

3.1

40.2

45.5

Minor BPS

44.8

-0.4

1.7

52.39

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038850

15478843 - 15493476

14634