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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1549275_1553040_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1549275 - 1553040
Intron Length:
3766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTTCACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATATTTTCACT
Flanking Amino Acid:
NSTGRVLDRDPPLSIQSIVV
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.3
78.8
38.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
87.4
0.84
0.7
81.3
29.6
Minor 5ss
45.2
-0.5
2.8
57.5
40.5
Minor BPS
57.9
0.33
1.8
77.15
39.5

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347