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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15495818_15551775_F

Intron Information:

Intron Rank:
131602
Intron Class:
major
Intron Phase:
Intron Coordinates:
15495818 - 15551775
Intron Length:
55958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTATCTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
TCTCTCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
71.7
0.49
1
74.9
33.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.4
0.09
1.9
73.67
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020642
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021686
15490489 - 15552241
61753