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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15495818_15583471_F

Intron Information:

Intron Rank:
131605
Intron Class:
major
Intron Phase:
Intron Coordinates:
15495818 - 15583471
Intron Length:
87654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CAGGTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
77
0.61
1
73.3
41.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.5
-0.1
1.8
60.55
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020642
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032430
15490489 - 15584471
93983