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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1553202_1607639_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1553202 - 1607639
Intron Length:
54438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAA
U12 Branch Point Sequence:
TTTTTTTTTGCA
Flanking Amino Acid:
IVPIDEESRNGTILVDNMLI
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
53
0.08
1
60.9
31.3
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
44.6
-0.4
3.5
74.26
38.1

Associated Gene:

Gene:
PCDH15
Ensembl Gene ID:
ENSAPLG00000003312
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003398
1311071 - 1609417
298347