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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15574231_15598216_F

Intron Information:

Intron Rank:
135297
Intron Class:
major
Intron Phase:
Intron Coordinates:
15574231 - 15598216
Intron Length:
23986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGATA
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTGCTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
71.4
40.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.4
0.82
0.8
77.7
36.7
Minor 5ss
47.5
-0.2
2.9
65.8
45.4
Minor BPS
58.1
0.33
1.8
75.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022775
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031746
15565266 - 15598247
32982