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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_157080_158049_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157080 - 158049
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GAATAAATATCT
Flanking Amino Acid:
PGGFTDSLNVSRIDVYLSRY
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.2
39
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.9
0.72
0.9
73.5
41.8
Minor 5ss
45.6
-0.5
2.5
56.4
42.4
Minor BPS
41.3
-0.5
2.1
58.95
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015012
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028996
145891 - 160582
14692