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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_157109_158958_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
157109 - 158958
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTACCA
5'SS Class:
weak_major
3'SS Sequence:
TCCCCCAGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATTTCTAATG
Flanking Amino Acid:
WSVLDLALEKENKYLHGFFQ
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.5
0.11
1.4
49.2
41.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.7
0.4
0.9
61.6
33.4
Minor 5ss
26.7
-2.7
2.9
32.8
41.3
Minor BPS
56.5
0.07
1.7
64.16
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015012
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015635
145891 - 164734
18844