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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15731977_15739785_F

Intron Information:

Intron Rank:
140816
Intron Class:
major
Intron Phase:
Intron Coordinates:
15731977 - 15739785
Intron Length:
7809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GAATTATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
32.1
-2
2.8
39.3
41.2
Minor BPS
49.3
0.03
1.7
65.09
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025828
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019702
15731296 - 15744326
13031