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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15739841_15743574_F

Intron Information:

Intron Rank:
140817
Intron Class:
major
Intron Phase:
Intron Coordinates:
15739841 - 15743574
Intron Length:
3734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TATCTCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.5
0.66
0.9
77.7
35.1
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
60
0.29
1.6
68.62
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025828
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019702
15731296 - 15744326
13031