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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_158194_159025_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158194 - 159025
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCATTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TGCTTCTGCATT
Flanking Amino Acid:
VFDLPESLVKFILGHILVFD
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
74.4
0.55
0.9
69.1
36.6
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
49
0.01
1.9
68.72
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015012
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028996
145891 - 160582
14692