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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15854602_15884778_F

Intron Information:

Intron Rank:
137488
Intron Class:
major
Intron Phase:
Intron Coordinates:
15854602 - 15884778
Intron Length:
30177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
ATTACAGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
67
0.42
1.1
58
38.5
Major PPT
82.8
0.74
0.8
76.9
30.5
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
51.1
0.03
2.3
72.08
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024032
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041709
15854259 - 15884965
30707
ENSAPLT00000030560
15854465 - 15885413
30949